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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7326739_7329029_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7326739 - 7329029
Intron Length:
2291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTCTTTTACCT
Flanking Amino Acid:
SVQNLPQWEGHLVNLFARLA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.7
0.58
0.9
71.9
38
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
59.6
0.38
1.6
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048