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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7329105_7329951_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7329105 - 7329951
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATTCTTATTT
Flanking Amino Acid:
YIDWDPYVPKIFTRILRSLN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.1
0.88
0.7
84
29.8
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
60.4
0.41
1.5
72.1
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048