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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7330653_7331557_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7330653 - 7331557
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTATATTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
GTATATTCAACA
Flanking Amino Acid:
YHPSNNGRWLNKLMKLLQRL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
68.3
0.41
1
62.8
42.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
55
0.15
1.7
66.68
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048