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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7331824_7333435_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7331824 - 7333435
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGAACCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTTCTTGAACC
Flanking Amino Acid:
PELVIPPVLEKTYPALETLT
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
69.8
0.45
0.9
63
39.1
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
73.8
0.73
1.3
80.25
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048