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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73325497_73377485_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73325497 - 73377485
Intron Length:
51989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTATTA
Flanking Amino Acid:
EDGATMTFFKKSKISTYDKM
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.8
82
34.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
67.3
0.54
1.5
75.6
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029538
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028173
73297508 - 73377703
80196