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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7335792_7336948_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7335792 - 7336948
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCATT
Flanking Amino Acid:
FEDFVLQFMDRLPWRRFSTS
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
0.8
79
34
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
59.4
0.38
2
84.39
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048