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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73429408_73455928_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73429408 - 73455928
Intron Length:
26521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTCTGTCAACA
Flanking Amino Acid:
NGMVRELIDHKADLAVAPLA
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.8
0.63
0.9
73.6
35.7
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
51.4
0.04
2.2
72.76
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012994
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013531
73429180 - 73687819
258640