About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73481956_73531487_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73481956 - 73531487
Intron Length:
49532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAATA
5'SS Class:
major
3'SS Sequence:
ATTCTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCATTCTAATT
Flanking Amino Acid:
DSGLLDGFMTTDAALMYDAV
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.8
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.9
0.56
0.9
72
37.5
Minor 5ss
43.6
-0.7
2.9
58.4
45.9
Minor BPS
53.6
0.19
1.7
72.38
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012994
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013531
73429180 - 73687819
258640