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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7364527_7364815_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7364527 - 7364815
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
VPLVLQVLKQTARSNSWHAR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.6
0.82
0.7
82.4
28.2
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028161
7364452 - 7371264
6813