About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7364972_7368763_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7364972 - 7368763
Intron Length:
3792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TGCTTAGTAACT
Flanking Amino Acid:
IKLLEDEQLEVREMAATTLS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
74.3
0.55
0.9
68.8
37.1
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
49.3
0.03
2.2
73.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028161
7364452 - 7371264
6813