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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7368927_7370014_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7368927 - 7370014
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTCTGTAATT
Flanking Amino Acid:
GSAVDTIPSGDLVKRHAGVL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.2
0.52
0.9
67.2
38.1
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
65.7
0.57
2
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028161
7364452 - 7371264
6813