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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_737508_738033_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
737508 - 738033
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CATACATTAACA
Flanking Amino Acid:
WQGLYPTIRERNAVMFNNDL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
72.9
0.52
0.8
68.1
32
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
63.3
0.41
1.7
70.94
40.6

Associated Gene:

Gene:
BTBD3
Ensembl Gene ID:
ENSAPLG00000010945
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011396
737182 - 743840
6659