Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_738125_738603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

738125 - 738603

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTCAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAAGAT

U12 Branch Point Sequence:

CCTTTCTCAACA

Flanking Amino Acid:

GGTQRLPGHKYVLAVGSSVF

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

75.1

35.1

Major BPS

58.6

0.22

1.1

55.1

40.4

Major PPT

77.4

0.62

0.8

73.3

30.3

Minor 5ss

41.4

-1

2.9

52.3

38.8

Minor BPS

64.9

0.46

1.6

70.77

41.8

Associated Gene:

Gene:

BTBD3

Ensembl Gene ID:

ENSAPLG00000010945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011396

737182 - 743840

6659