Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73832121_73832224_F

Intron Information:

Intron Rank:

127189

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

73832121 - 73832224

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTCTTCA

5'SS Class:

weak_major

3'SS Sequence:

TTTGTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TCCTGTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.3

0.29

1.3

62.4

38.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

85.3

0.79

0.7

81.6

30.4

Minor 5ss

48.5

-0.1

60.5

43.8

Minor BPS

48.9

-0

66.47

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025528

73831998 - 73834816

2819