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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73875717_73877464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73875717 - 73877464
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
DYNEELADLTAKRLKLHEQL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
84.5
33
Major BPS
80
0.75
1
78.6
31
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
41.5
-0.9
3
60.7
43.8
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446