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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73877616_73883840_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73877616 - 73883840
Intron Length:
6225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
KTILQAAKQIVGAENGQEAI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446