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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73884425_73905817_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73884425 - 73905817
Intron Length:
21393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTAATTTGAACA
Flanking Amino Acid:
AKSGDELQNELFELLGPEGF
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
53
0.09
1.5
61.24
38.8

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446