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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7393234_7393435_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7393234 - 7393435
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ACATGCTAAACA
Flanking Amino Acid:
EKPRQVTVKLKCKESDSPHA
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
49.8
-0
2.1
62.21
44

Associated Gene:

Gene:
ERLEC1
Ensembl Gene ID:
ENSAPLG00000009932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010367
7392365 - 7405396
13032