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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73936022_73963153_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73936022 - 73963153
Intron Length:
27132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATGCTTAATA
Flanking Amino Acid:
LSKGEILRTQMLVTTPEKWD
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.3
0.46
0.8
64.3
31.1
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
67.2
0.54
1.7
74.62
37

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446