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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7396196_7398576_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7396196 - 7398576
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ATATCCATAACT
Flanking Amino Acid:
TPLLCNHPKYRFRASPVNDI
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
76
0.58
0.9
71.5
38.3
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
74.9
0.86
1.5
88.95
34.8

Associated Gene:

Gene:
ERLEC1
Ensembl Gene ID:
ENSAPLG00000009932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010367
7392365 - 7405396
13032