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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7398782_7403133_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7398782 - 7403133
Intron Length:
4352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
ACAAAAAATATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCTTTCACC
Flanking Amino Acid:
MMMKNPLSEPEGQMTPYYPV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
77.7
0.69
1
81
30.2
Major PPT
48.8
-0
1
37.6
37.9
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
68.7
0.57
1.7
77.59
39

Associated Gene:

Gene:
ERLEC1
Ensembl Gene ID:
ENSAPLG00000009932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010367
7392365 - 7405396
13032