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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7403198_7403339_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7403198 - 7403339
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
QYHEEKETGQKINIQEYYLG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.2
0.75
0.9
77.5
35.5
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
ERLEC1
Ensembl Gene ID:
ENSAPLG00000009932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010367
7392365 - 7405396
13032