About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7403418_7404324_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7403418 - 7404324
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
TATTATTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATCTAAACA
Flanking Amino Acid:
LFKQSSCSYRIESYWTYEVC
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
58.7
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.9
0.58
1.1
79.8
37.3
Minor 5ss
41.9
-0.9
2.8
49.2
41.2
Minor BPS
67.6
0.55
1.7
79.58
36.6

Associated Gene:

Gene:
ERLEC1
Ensembl Gene ID:
ENSAPLG00000009932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010367
7392365 - 7405396
13032