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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74045882_74049671_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74045882 - 74049671
Intron Length:
3790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
GTTTGGTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTACAAACA
Flanking Amino Acid:
VYGISHKAYQMDPSLEKHRE
Intron Amino Acid Position:
943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
100
1.24
0.5
100
0
Major PPT
66.7
0.38
1.1
58.1
47.3
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
48.9
-0
2.2
72.86
38.9

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446