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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74062607_74063078_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74062607 - 74063078
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTCCAGTAATT
Flanking Amino Acid:
SEYFIVQKKQVITKEPQLLV
Intron Amino Acid Position:
1246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
64.8
0.33
1
64.2
42.1
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
49.7
0.06
2.2
75.64
40.8

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446