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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74063248_74065134_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74063248 - 74065134
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATGCACT
Flanking Amino Acid:
ILPERHPPHTELLDLQPLPV
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.9
0.72
0.8
77.2
37.1
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
50.7
0.1
2.2
78.19
43.7

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446