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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74066728_74068247_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74066728 - 74068247
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTC
5'SS Class:
major
3'SS Sequence:
ATCTTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CCTATCTTGATT
Flanking Amino Acid:
KVRIEEKLGKKVVELTGDVT
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.7
31.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.7
0.6
0.9
69.5
40
Minor 5ss
59
0.3
2.2
70
34.4
Minor BPS
61.2
0.43
1.3
70.58
41.2

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446