About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74081583_74081683_F


Intron Information:

Intron Rank:
30

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
74081583 - 74081683

Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACATTTG

5'SS Class:
major

3'SS Sequence:
CTTTCTGTTTTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CATTAAT

U12 Branch Point Sequence:
ACCTCATTAATC

Flanking Amino Acid:
EELFVNCKIQVLIATSTLAW

Intron Amino Acid Position:
1643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.6
0.65
1
72.3
40

Major BPS
79.4
0.73
0.9
79.6
29.1

Major PPT
82.1
0.72
0.8
80.8
31.3

Minor 5ss
42.1
-0.9
3.2
57.9
46.7

Minor BPS
61.9
0.35
1.6
65.6
40.4

Associated Gene:

Gene:
ASCC3

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73875627 - 74137072
261446