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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74081805_74085193_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74081805 - 74085193
Intron Length:
3389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCACA
5'SS Class:
major
3'SS Sequence:
GTCTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
TRRYVDYPITDVLQMMGRAG
Intron Amino Acid Position:
1683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
64.6
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
1
72.4
37.7
Minor 5ss
38.7
-1.3
3
50.4
45.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446