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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74088120_74096707_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74088120 - 74096707
Intron Length:
8588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCAATTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTTTTCAATT
Flanking Amino Acid:
YFFRRLIMNPTYYNLEDVSH
Intron Amino Acid Position:
1769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.2
30.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.2
0.55
0.9
66.1
40.5
Minor 5ss
35.2
-1.7
2.8
41.6
38.3
Minor BPS
57.7
0.32
1.5
70.83
41.3

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446