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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74097233_74114959_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74097233 - 74114959
Intron Length:
17727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
NIEELLLILTNAEEYTDLPV
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446