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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74128805_74129319_F

Intron Information:

Intron Rank:
37
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
74128805 - 74129319
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTTTGCA
5'SS Class:
major
3'SS Sequence:
AGTGTGCATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
GAGCCAAGAAAA
Flanking Amino Acid:
LYLFRYVPIPSYQGPIECLP
Intron Amino Acid Position:
1983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1
59.4
32.8
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
46.7
-0.1
1.7
47.8
44.6
Minor 5ss
35.4
-1.7
3.1
40.8
39.7
Minor BPS
38.8
-0.8
1.8
44.32
36.1

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446