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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74129433_74135174_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74129433 - 74135174
Intron Length:
5742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTCTTGTAATC
Flanking Amino Acid:
SELQTAHISQAWNFLSRLPI
Intron Amino Acid Position:
2021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.4
0.89
0.7
84.3
30.8
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
49.3
-0
2
63.56
36.4

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446