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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74135382_74136650_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74135382 - 74136650
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATAAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTCCCTAACA
Flanking Amino Acid:
NLQRTQMGYQGKQDSKAVAP
Intron Amino Acid Position:
2090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
76.5
34.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82.1
0.72
0.8
78
29.3
Minor 5ss
33
-1.9
3
41.3
45.3
Minor BPS
81.7
0.99
1.5
92.55
26.8

Associated Gene:

Gene:
ASCC3
Ensembl Gene ID:
ENSAPLG00000012589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013180
73875627 - 74137072
261446