About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74168547_74169567_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74168547 - 74169567
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGTC
5'SS Class:
major
3'SS Sequence:
CCCTCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACCC
Flanking Amino Acid:
GRELGSHLLQTLDGFIFVVA
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
64.9
41.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
78.6
0.64
0.7
72.5
25.7
Minor 5ss
32.8
-2
3.8
49.9
46.7
Minor BPS
50.2
-0
1.8
58.45
46.5

Associated Gene:

Gene:
SIM1
Ensembl Gene ID:
ENSAPLG00000012534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013053
74160069 - 74203655
43587