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Intron Name: Anas_platyrhynchos_platyrhynchos_3_74170065_74171057_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74170065 - 74171057

Intron Length:

993

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CGTGTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAG

U12 Branch Point Sequence:

CCCGCCTCAGCG

Flanking Amino Acid:

NAGLTCGGYKVIHCSGYLKI

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

46.3

-0.2

1.6

53.3

44.2

Major PPT

69.3

0.43

0.9

62.1

34.8

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

43.8

-0.6

1.9

42.75

48.4

Associated Gene:

Gene:

SIM1

Ensembl Gene ID:

ENSAPLG00000012534

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013053

74160069 - 74203655

43587