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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74171258_74171363_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74171258 - 74171363
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTG
5'SS Class:
major
3'SS Sequence:
GTGTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTCTCTCCCACT
Flanking Amino Acid:
LDMKLIFLDSRVAELTGYEP
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
46.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
75.9
0.58
0.9
66.4
40.7
Minor 5ss
32.3
-2
3.7
46.2
49.1
Minor BPS
44
-0.3
2.2
64.17
46.4

Associated Gene:

Gene:
SIM1
Ensembl Gene ID:
ENSAPLG00000012534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013053
74160069 - 74203655
43587