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Intron Name: Anas_platyrhynchos_platyrhynchos_3_74171471_74172340_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74171471 - 74172340

Intron Length:

870

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAAGGAGA

5'SS Class:

major

3'SS Sequence:

TTTGTCTCCGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CCCCTCTGAGGC

Flanking Amino Acid:

TFHLRCAHHLLLVKGQVTTK

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.4

60.5

45.8

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

82.2

0.72

0.8

77.4

31.3

Minor 5ss

32.6

-2

3.1

35.1

41.5

Minor BPS

39.4

-0.8

1.8

39.43

Associated Gene:

Gene:

SIM1

Ensembl Gene ID:

ENSAPLG00000012534

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013053

74160069 - 74203655

43587