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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74172489_74192230_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74172489 - 74192230
Intron Length:
19742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
GCCTTTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACT
Flanking Amino Acid:
HCIVSVNYVLTDTEYKGLQL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.3
69.7
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.2
0.52
0.9
68.5
36.5
Minor 5ss
34.4
-1.8
3.1
40.9
38.5
Minor BPS
65.3
0.56
1.7
82.56
39.6

Associated Gene:

Gene:
SIM1
Ensembl Gene ID:
ENSAPLG00000012534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013053
74160069 - 74203655
43587