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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74200144_74202924_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74200144 - 74202924
Intron Length:
2781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGACCTCAGTG
Flanking Amino Acid:
PHITSVHRIHGRGHWDEDSV
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
78.6
0.64
0.7
72.3
32.3
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
48.4
-0.2
1.9
56.5
45

Associated Gene:

Gene:
SIM1
Ensembl Gene ID:
ENSAPLG00000012534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013053
74160069 - 74203655
43587