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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7425939_7426502_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7425939 - 7426502
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
ATATTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTGTTAAGA
Flanking Amino Acid:
WNSLHQAAFQGYTEIIKILL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.4
0.71
0.9
78.7
38.8
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
52.3
0.07
2.3
70.13
42.8

Associated Gene:

Gene:
ASB3
Ensembl Gene ID:
ENSAPLG00000010271
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010721
7423298 - 7434655
11358