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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7427252_7428690_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7427252 - 7428690
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TAAATATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
IHAAAEMGHKNILEMLIPIT
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
69.9
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
1
66.6
43.5
Minor 5ss
34.7
-1.7
3.6
48.4
42.3
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
ASB3
Ensembl Gene ID:
ENSAPLG00000010271
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010721
7423298 - 7434655
11358