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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7428889_7430771_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7428889 - 7430771
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTGCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGCTGCTCATAG
Flanking Amino Acid:
RSPMCMVFQKKFFNLIGIFL
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
64.2
0.32
0.9
57.3
38.7
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
40.6
-0.8
2.2
45.54
46.4

Associated Gene:

Gene:
ASB3
Ensembl Gene ID:
ENSAPLG00000010271
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010721
7423298 - 7434655
11358