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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74300319_74315615_F

Intron Information:

Intron Rank:
140419
Intron Class:
major
Intron Phase:
Intron Coordinates:
74300319 - 74315615
Intron Length:
15297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.8
81.1
31
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
47.2
-0.1
1.7
62.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042038
74300244 - 74319570
19327