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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7431024_7432777_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7431024 - 7432777
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
ATTGTGTAAAGT
Flanking Amino Acid:
FNPVNLLFRFWIYSVSEDVL
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
77.5
0.62
1
72.9
42.2
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
42.3
-0.5
2.5
64.83
46.2

Associated Gene:

Gene:
ASB3
Ensembl Gene ID:
ENSAPLG00000010271
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010721
7423298 - 7434655
11358