About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7432912_7434401_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
7432912 - 7434401

Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTAAGCTAA

5'SS Class:
strong_major

3'SS Sequence:
TTGTATTCCTCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGTAT

U12 Branch Point Sequence:
TTCTGTTCACCA

Flanking Amino Acid:
KFSWTPKSHFAFIPSLSHLC

Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.5
0.77
1
72.9
34.4

Major BPS
71.5
0.53
1.4
71.7
44.6

Major PPT
79.3
0.66
0.9
77.5
36.5

Minor 5ss
43.3
-0.7
2.9
52.2
46

Minor BPS
46.3
-0.2
2.2
62.68
44.2

Associated Gene:

Gene:
ASB3

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7423298 - 7434655
11358