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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7438013_7438493_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7438013 - 7438493
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTTTTTGATCC
Flanking Amino Acid:
HRNSNNWKVLDSLYHGATAI
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
49.7
-0
1.7
61.9
37.4

Associated Gene:

Gene:
MALL
Ensembl Gene ID:
ENSAPLG00000010673
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011126
7437444 - 7439857
2414