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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7438662_7439749_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7438662 - 7439749
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTGTCCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACGGAAGG
Flanking Amino Acid:
VPYAFMLPEILCGTWVWILV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
38.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
73.6
0.53
1
69.9
36.5
Minor 5ss
32.5
-2
2.6
36.6
34.7
Minor BPS
36.2
-1.1
2.3
39.41
43.5

Associated Gene:

Gene:
MALL
Ensembl Gene ID:
ENSAPLG00000010673
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011126
7437444 - 7439857
2414