Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74401201_74407281_R

Intron Information:

Intron Rank:

129533

Intron Class:

major

Intron Phase:

Intron Coordinates:

74401201 - 74407281

Intron Length:

6081

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCTCC

5'SS Class:

major

3'SS Sequence:

ACTTATGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGTTTTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

62.8

38.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.52

0.9

69.9

40.6

Minor 5ss

39.2

-1.2

2.9

43.1

44.2

Minor BPS

72.8

0.79

1.3

84.4

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019112

74399434 - 74407952

8519