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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7442048_7443581_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7442048 - 7443581

Intron Length:

1534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAGACAGC

5'SS Class:

weak_major

3'SS Sequence:

TTCTTTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATTCTTTCAAAT

Flanking Amino Acid:

PDVSSLPFWHRDREFLKSLF

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.7

0.18

1.2

53.4

Major BPS

100

1.24

0.5

100

Major PPT

90.3

0.91

0.6

86.8

24.1

Minor 5ss

40.1

-1.1

3.3

43.1

Minor BPS

0.21

1.6

73.2

37.3

Associated Gene:

Gene:

NPHP1

Ensembl Gene ID:

ENSAPLG00000010863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011382

7441778 - 7456887

15110